Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-HALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVGI-EIS--SAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQS------------------YNAELAAKVTDVALDGLRANRK
3F0C Chain:A ((10-205))
------------DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLH-FRHLLNLSKLRSDF--TKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKRG-NKHENAEFLVHLLLGVRMVKLKYKEINDFDESDYEDLDKNMCKVAGMFLKEIQT---
General information:
TITO was launched using:
RESULT:
Template:
3F0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81509 for 1208 contacts (-67.5/contact) +
2D Compatibility (PS) -18718 + (NN) -12237 + (LL) 1356
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -120308.0 ( -99.59 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3F0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0C-query.scw
PDB file :
Tito_Scwrl_3F0C.pdb
: