Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTL-AGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
2GPY Chain:A ((5-214))
--------EERLKHYLEKQIPARDQYIEQMEREAHEQQVP--IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLF--------------------QWLLEHPQYDTRIFPVG-----DGIAISIKR
General information:
TITO was launched using:
RESULT:
Template:
2GPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137102 for 1417 contacts (-96.8/contact) +
2D Compatibility (PS) -20145 + (NN) -9222 + (LL) 1380
1D Compatibility (HY) -12800 + (ID) 2400
Total energy: -180289.0 ( -127.23 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2GPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GPY-query.scw
PDB file :
Tito_Scwrl_2GPY.pdb
: