Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQPPPSLCGRALVALVLACGLSRIWGEERGFPPDRATPLLQTAEIMTPPTKTLWPKGSNASLARSLAPAEVPKGDRTAGSPPRTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGNSTLLRIIYKNKCMRNGPNILIASLALGDLLHIVIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSRIKGIGVPKWTAVEIVLIWVVSVVLAVPEAIGFDIITMD-YKGSYLRI--CLLHPVQKTAFM-QFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRKKSGMQIALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSRILKLTLYNQNDPNRCELLSFLLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQSFEEKQSLEEKQSCLKFKANDHGYDNFRSSNKYSSS |
| 4LDL Chain:A ((187-462)) | ---------------------------------------------------------------------------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS------FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASS--IVSFY--VPLVIMVFVYSRVFQEAKRQLQ--KFALKEH-----KALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEV---YILLNWIGY----VNSGFNPL-IYCRSPDFRIAFQELLCL--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201558 for 2008 contacts (-100.4/contact) +
2D Compatibility (PS) -27610 + (NN) -10085 + (LL) 8624
1D Compatibility (HY) -26800 + (ID) 4000
Total energy: -261429.0 ( -130.19 by residue)
QMean score : 0.272
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