Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVKPSWGPGPSEGVTAVPTSDLGEIHNWTELLDLFNHTLSECHVELSQSTKRVVLFALYLAMFVVGLVENLLVICVNWRGSGRAGLMNLYILNMA----IADLGIVLSLPVWMLE-VTLDYTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQRYQHRVRRAMCAGIWVLSAIIPLPEVVHIQL----VEGPEPMCLFMAPFETYSTWALAVALSTTILGFLLPFPLITVFNVLTACRLR---QPGQPKSRRH-CLLLCAYVAVFVMCWLPYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVIDCFSMLHCVINPILYNFLSPHFRGRLLNAVVHYLPKDQTKAGTCASSSSCSTQHSIIITKGDSQPAAAAPHPEPSLSFQAHHLLPNTSPISPTQPLTPS |
| 4XEE Chain:A ((32-345)) | ----------------------------------------------------KVLVTAIYLALFVVGTVGNSVTLFTLARK-------STVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVN-TFMSFLFPMLVISILNTVIANKLTVMV-PGRVQALRHGVLVLRAVVIAFVVCWLPYHVRRLMF-CYISDEQWTTFLFDFYHYFYMLTNALFYASSAINPILYNLVSANFRQVFLSTLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XEE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273338 for 1926 contacts (-141.9/contact) +
2D Compatibility (PS) -27188 + (NN) -12799 + (LL) 2764
1D Compatibility (HY) -26800 + (ID) 3800
Total energy: -341161.0 ( -177.13 by residue)
QMean score : 0.264
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