Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVM-GLLGNSATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYS-----IIWNPLTTSSYTLSCKLHTFLFEACSYATLLHVLTLSFERYIAICHP---FRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRSYFRAYMILLP--FSETFFYLSSVINPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV |
| 4PXF Chain:A ((27-323)) | --------------------PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVT-VQHKK--LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT-------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----GENHAIMGVAFTWVMALACAAPPLVGWSRYIP-------EGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCY-----------GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMTIPAFFAKT----SAVYNPVIYIMMNKQFRNCMVTTLCCGKN----------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188244 for 2236 contacts (-84.2/contact) +
2D Compatibility (PS) -28972 + (NN) 178 + (LL) 10868
1D Compatibility (HY) -33200 + (ID) 3900
Total energy: -243270.0 ( -108.80 by residue)
QMean score : 0.261
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