Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSANQTASVTEFILLGLSAHPKLEKTFFVLILLMYLVI-LLGNGVLILMTVSNSHLHMPMYFFLGNLSFLDICYTTSSVPLILDSFLTPRKTISFSACAVQMFLS-FAMGATECVLLSMMAF--DRYVAICNPLRYPVVMSKAAYMPIRLPAPG
3QAK Chain:A ((18-127))
----------------------IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-----FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV
General information:
TITO was launched using:
RESULT:
Template:
3QAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56715 for 625 contacts (-90.7/contact) +
2D Compatibility (PS) -10886 + (NN) -7551 + (LL) 2236
1D Compatibility (HY) -10000 + (ID) 1550
Total energy: -84466.0 ( -135.15 by residue)
QMean score : -0.002
(partial model without unconserved sides chains):
PDB file :
Tito_3QAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QAK-query.scw
PDB file :
Tito_Scwrl_3QAK.pdb
: