Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDNITSITEFLLLGFPVGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHAPMYFFLSHLAVVDIAYACNTVPRMLVNLLHPAK-PISFAGRMMQTFLFSTFAVTECLLLVVMSYDLYVAICHPL---RYLAIMTWRVCITLAVTSWTTGVLLSLIHLVLLLPLPFCRPQKIYHFFCEILAVLKLACADTHIN-ENMVLAGAISGLVGPLSTIVVSYMCILCAILQIQSREVQRKAFCTCFSHLCVIGLFYGTAIIMYVGPRYGNPKEQKKYLLLFHSLFNPMLNPLICSLRNSEVKNTLKRVLGVERAL |
| 4NC3 Chain:A ((43-240)) | ------------------------------------TIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVV---W-------LISIGIAIPVP------IKGIET-VDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHA-LQKKAADLEDN-WETLNDNLKVIEKADNAAQVKDALTKMRAKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155178 for 1203 contacts (-129.0/contact) +
2D Compatibility (PS) -19464 + (NN) -3188 + (LL) 4224
1D Compatibility (HY) -14800 + (ID) 2550
Total energy: -190956.0 ( -158.73 by residue)
QMean score : 0.200
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