Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDDGKVNASSEGYFILVGFSNWPHLEVVIFVVVLIFYLMTLIG---NLFIIILSYLDSHLHTPMYFFLSNLSFLDLCYTTSSIPQLLVN------LWGPEKTISYAGCMIQLYFVLALGTTECVLLVVMSYDRYAAVCRPLHYTVLMHPRFCH---LLAVA-SWVSGFTNSALHSSFTFWVPLCGHRQVDHFFCEVPALLRLSC-VDTHV------NELTLMITSSIFVLIPLILILTSYGAIV----RAVLRMQSTTGLQKVFGTCGAHLMAVSLFFIPAMCIYLQPPSG--------NSQDQGKF---IALFYTVVTPSLNPLIYTLRNKVVRGAVKRLMGWE |
| 1LN6 Chain:A ((45-312)) | -------------------------------------FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP------TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRFGENHAIMGVAFTWVMALACAA--------PPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKA----EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVVATTLC |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1LN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171592 for 1734 contacts (-99.0/contact) +
2D Compatibility (PS) -21679 + (NN) 18422 + (LL) 5100
1D Compatibility (HY) -25600 + (ID) 3400
Total energy: -198749.0 ( -114.62 by residue)
QMean score : 0.081
|
|
|