Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGMEGLLQNSTNFVLTGLITHPAFPGLLFAIVFSIFVVAITANLVMILLIHMDSRLHTPMYFLLSQLSIMDTIYICITVPKMLQDLLSKDKTISFLGCAVQIFLYLTLIGGEFFLLGL--MAYDRYVAVCNPLRYPLLMNRRVCLFMVVGSWVGGSLDGFMLTPVTMSFPFCRSREINHFFCEIPAVLKLSCT-------DTSLYETLMYACCVLMLLIPLSVISVSYTHILLTVHRMNSAEGRRKAFATCSSH------IMVVSV------FYGAAFYTNVLPHSYHTPEKDKVVSAFYTILTPMLNPLIYSLRNKDVAAALRKVLGRCGSSQSIRVATVIRKG |
| 2X72 Chain:A ((42-313)) | --------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFF--ATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV-------------MALA-CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGP-IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224335 for 1831 contacts (-122.5/contact) +
2D Compatibility (PS) -25556 + (NN) -7490 + (LL) 3264
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -257567.0 ( -140.67 by residue)
QMean score : 0.110
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