Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKEQDSNVTEFVLLGLSSSWELQLFLFLLFLFFYIAIVLGNLLIVVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTVPKMLGDFLQQGKSISFSGCLAQIYFLHFLGASEMFLLTVMAYDRYVAICNPLRYLTVMNPQLCLWLVLACWCGGFIHSIMQVILVIQLPF-CGPNELDNFYCDVPQVIKLACMDTYVVEVLVIANSGLLS-------LVCFLVLLFSYAIILITLRTHFCQGQNKVFSTCAS-HLTVVSLIFVPCVFIYLRPFCSFS----------VDKIF---SLFYTVITPMLNPLIYTLRNTDMKTAMKKLRIKPCGIPLPC |
| 2X72 Chain:A ((34-318)) | ----------------LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK--LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----------------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286481 for 2002 contacts (-143.1/contact) +
2D Compatibility (PS) -26229 + (NN) -6616 + (LL) 3560
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -320666.0 ( -160.17 by residue)
QMean score : 0.156
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