Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILSKGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAELKLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSG-------GSRSRIPHSLHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHG-----------------------------------------------------------------------------------------------------------------------------------------------------TNLSARSSPESRVTQSILVLVSTLCY-FTRSPPSLHMSLF-P---NPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACCGRNPQFPKLVR |
| 3EML Chain:A ((20-469)) | ---GSSVYITVELAIAVLAILGNVLVCWAVWLN---SNLQNVTNYFVVSLAAADIAVGVLA-IPFAITIS-TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN---GLVTGTRAKGII-AICWVLSFAIGLTPMLGWNNCGQ---------SQGCGEGQVACLFEDVVP-MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170234 for 2101 contacts (-81.0/contact) +
2D Compatibility (PS) -28283 + (NN) -4123 + (LL) 1280
1D Compatibility (HY) -19600 + (ID) 1950
Total energy: -222910.0 ( -106.10 by residue)
QMean score : 0.216
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