Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEMSCIQNLLPCKPYLPGTEPPPPVCCLPLKDMVAHQAQCLCSALANPDLLKDFNVTMDGALKLAKTCGASVDMSVCKNGNH
1N89 Chain:A ((5-65))
------SQLAVCASAILSGAKPSGECCGNLRAQ---Q-GCFCQYAKDPTYGQ--YIRSPHARDTLTSCGLAVP---------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17287 for 385 contacts (-44.9/contact) +
2D Compatibility (PS) -6312 + (NN) -6398 + (LL) 1504
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -30393.0 ( -78.94 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: