Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLITLTYNNFKQYAQQGTVPAVEQNNGSKVLQNSFYKSVYYINSVLWPIKGMLVGVKHDLNTSGITMGRREKVVWGTDAMIAILALQIYYLYSIQELHILCTCQKNYFHISKEQKARNLS--------------
5C3L Chain:B ((18-141))
QLLCQDVENFQKFVKEQKQVQEEISRMSS-------KAMLKVQEDIKALKQLLSVASSGLQRNALAIDKLKI---ETAEELKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLA
General information:
TITO was launched using:
RESULT:
Template:
5C3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5182 for 456 contacts (-11.4/contact) +
2D Compatibility (PS) -11003 + (NN) 2588 + (LL) 1144
1D Compatibility (HY) 0 + (ID) 850
Total energy: -13303.0 ( -29.17 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_5C3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C3L-query.scw
PDB file :
Tito_Scwrl_5C3L.pdb
: