Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQKQYNLGKSLKCKKKSLLTKVKNLLRFQEEKKSVDEKSRDIAKPREIKSEKSIDNKKNELVIAKIY
1QA4 Chain:A ((1-56))
-------GGKWSKSSVVGWPAVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAANNAACAW-----
General information:
TITO was launched using:
RESULT:
Template:
1QA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7240 for 147 contacts (49.3/contact) +
2D Compatibility (PS) -5637 + (NN) 4378 + (LL) 1296
1D Compatibility (HY) 1200 + (ID) 600
Total energy: 7877.0 ( 53.59 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1QA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QA4-query.scw
PDB file :
Tito_Scwrl_1QA4.pdb
: