Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSKSAFNSLDPALLYKGDLLRRMLFTLIALICYRLGTYVPIPGINLDIINDIFPKEGAGIFGVFNLFSGGALARM----TILVLNVMPYIVASIVMQLLSSAVKGINEVKNDGELGRRRMNSYIRYMTIVFCIFQSVTILIGLERMNREGTLVVIEPGVMFRTVGIFSLLGGTMFLIWLGEQISASGIGNGISLIIFTGIISELHNAFSFLLTLNKNGSMSLLI---------ILFVFVLFFLLLLLIIFVESSYRKVTVQYPKKQFKRLHSDDFTYIPLKINLSGVIPTIFANAILLT-----------PVSIANFYKGHAFSDFILNYFMA------------NKVVYIAAYLALIVFFNFFYTNFI-FNPEENADFLKKNGGFIPG-RRPGKHTSDYLQDIVFKLTFIGSAYLVVICTVPEVMRYYYDMPFIFGGTSLLIIVNVTTDTIMQIQSYIFSNRYDSWIKKYESKTKKLR |
| 2YXR Chain:A ((39-411)) | ------------------------------------------------------------IMGCIDVYTAGAQIPAIFGGTLITLGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAV-LFVG------AGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTI-----FVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGA------LGGGTGVLLTVSIVYRMYEQLLREKVSELHPAIAKL--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -309596 for 2424 contacts (-127.7/contact) +
2D Compatibility (PS) -32995 + (NN) -1812 + (LL) 6184
1D Compatibility (HY) -36400 + (ID) 4100
Total energy: -378719.0 ( -156.24 by residue)
QMean score : 0.190
|
|
|