Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGAAPINIPAGVSVECNDGKVLIKSAKAEKELRLCSDIVCQVTDNQLVLSVDQGKDSYNEIKPIWGTYRSNINNIINGIVNGFSVDLEINGIGYKAECDGKYLTLYLGYSHNIKYKVPKDVEIKCIKPTHLVVNGMDKQKVYVIASDICKIRKYDPYKGKGIVIKGKFMLRKVVSKKK
4IO9 Chain:E ((5-167))
----GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLL--VERPSDAQKH-RALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGK---
General information:
TITO was launched using:
RESULT:
Template:
4IO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103299 for 1126 contacts (-91.7/contact) +
2D Compatibility (PS) -17266 + (NN) 986 + (LL) 1352
1D Compatibility (HY) -9200 + (ID) 2650
Total energy: -130077.0 ( -115.52 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4IO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IO9-query.scw
PDB file :
Tito_Scwrl_4IO9.pdb
: