Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MISLLLVVLLFFCGDDAFAKQEPRSIAADSHIKVINYNPQAIHKYTGFYGYQSSILFEPGETIQNLSMGDPTGWQLVPQGNRLFIKPIDDIADTNATVITNKRVY-------------------YFELHAEEATGLDDPRLAYEVRFLYPLFSSDEIYTTNNGDILEQANPTTIPDINDIEVVKKGINFNYSISHVKGSQSIIPTKAFDDGRFTYLQFNKVNSDFPAVFMVDSAGYESLVNFRTVDDYLIIERVGSVFTLRNGSSTVCLFNENMPFAKGKR |
| 4NBY Chain:A ((33-119)) | -----------------------------------------------------------------------TGWQTI-DGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLY---LHDNIYYFGNNSKAATGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1395 for 341 contacts (-4.1/contact) +
2D Compatibility (PS) -7332 + (NN) -1446 + (LL) 4628
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -13145.0 ( -38.55 by residue)
QMean score : -0.052
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