Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVLKLHVKAFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQ-LK----GVSYNE----NIALKINQIAVFE-DAKVSDLVAFFS-KEWVLDPLSKRYALKDLMIDEKEVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISKPESGVMNFLSVAHYLYKNDDNIDHEIYELQEMLTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNAYAKHLNAQALLKSAKLYLERMGQKVIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDSYLNILHAKEVLDNNPEIIDSVNEKLKKYQLVYEKGVEVVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKPSDHFFNKIHLKAPHFLESFQNYAPLLEVNEVSGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALMAMGEKNKQTLGLDAHYHKVTFI |
1N62 Chain:A ((14-82)) | ------------------------PVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQAN---GASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1N62.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24632 for 324 contacts (-76.0/contact) +
2D Compatibility (PS) -6074 + (NN) -106 + (LL) 24856
1D Compatibility (HY) -2800 + (ID) 100
Total energy: -8856.0 ( -27.33 by residue)
QMean score : 0.411
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