Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKETKD
2JP3 Chain:A ((28-39))
----------------------------------------------------------LCIAGIALALSGKCKCRRNHTPSSLPEKVTPLITPGSAST-----------------
General information:
TITO was launched using:
RESULT:
Template:
2JP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2406 for 38 contacts (-63.3/contact) +
2D Compatibility (PS) -1219 + (NN) -58 + (LL) 4932
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -151.0 ( -3.97 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2JP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JP3-query.scw
PDB file :
Tito_Scwrl_2JP3.pdb
: