Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVREEG---NVQGLSFDIYEALLKTWFEKWRHQPKDLG--VVLKMAHSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWKCYLSDNERIYAKKKDHLLKGSGLLA
2Q5W Chain:E ((4-137))
QFEIVIEPIQTEQYRE----FTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGH------------
General information:
TITO was launched using:
RESULT:
Template:
2Q5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107322 for 950 contacts (-113.0/contact) +
2D Compatibility (PS) -14453 + (NN) -6503 + (LL) 812
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -133966.0 ( -141.02 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2Q5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q5W-query.scw
PDB file :
Tito_Scwrl_2Q5W.pdb
: