Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MDSLEWGLLIFLILVFLVGIGYYVFMVFSSKD-
1FDM Chain:? ((1-50))
AEGDDPAKAAFDSLQASATEYIGYAWA---MVVVIVGATIGIKLFKKFTSKAS
General information:
TITO was launched using:
RESULT:
Template:
1FDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14624 for 126 contacts (-116.1/contact) +
2D Compatibility (PS) -2923 + (NN) -107 + (LL) 556
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -21048.0 ( -167.05 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1FDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDM-query.scw
PDB file :
Tito_Scwrl_1FDM.pdb
: