Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIGEWEEIVIAPEEAYGVYESGYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSGTGCCGGHGGHGGKKGGGCGCSCSHG
4ODN Chain:A ((10-144))
-------TIRYTLQVEGEVLDQGE------------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHP--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4ODN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60562 for 817 contacts (-74.1/contact) +
2D Compatibility (PS) -14103 + (NN) 573 + (LL) -748
1D Compatibility (HY) -6800 + (ID) 2300
Total energy: -83940.0 ( -102.74 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_4ODN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ODN-query.scw
PDB file :
Tito_Scwrl_4ODN.pdb
: