Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKL-PKEIEIFVVASKNAHVVALEESNINL-------------KNAMKDLRPSATFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
4RHF Chain:A ((11-206))
-KITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRISLDTEVGVKIPSSPDAASKFLTEKYQAKDQQ--ITVFGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLSQQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWG--
General information:
TITO was launched using:
RESULT:
Template:
4RHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149072 for 1455 contacts (-102.5/contact) +
2D Compatibility (PS) -19895 + (NN) -11377 + (LL) 168
1D Compatibility (HY) -16000 + (ID) 3200
Total energy: -199376.0 ( -137.03 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4RHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHF-query.scw
PDB file :
Tito_Scwrl_4RHF.pdb
: