Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGR----MYRSAREV------GFQVSSSGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLPLFFF------STNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGIFDENMHQFLNAIVVAEEDASKLTEVRAAL--NEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVAMANASDNVKAAANHLTDTNEADGVYKFLKEFIS |
| 3NIW Chain:A ((4-261)) | --KYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWES-----KEMMYENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNKMAIRE-----TNDF----------LTDITLPVAKCLIVG--DAGKLIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGV--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NIW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -91076 for 1980 contacts (-46.0/contact) +
2D Compatibility (PS) -25893 + (NN) -4560 + (LL) 2776
1D Compatibility (HY) -19600 + (ID) 3750
Total energy: -142103.0 ( -71.77 by residue)
QMean score : 0.452
|
|
|