Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHEGNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNP--QSNSIYTVLGKGSFVNYYSLFQGN--VDDFLFTAISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFF----KSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEW-VVKDKGLYNYVKVRQFDD
3LA7 Chain:A ((42-234))
-------------------PPVVETFERNKTIFFPGD-PAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENP---ELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCAD-GITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHK---------------
General information:
TITO was launched using:
RESULT:
Template:
3LA7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105451 for 1362 contacts (-77.4/contact) +
2D Compatibility (PS) -19327 + (NN) -871 + (LL) 2380
1D Compatibility (HY) -9600 + (ID) 1500
Total energy: -134369.0 ( -98.66 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3LA7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LA7-query.scw
PDB file :
Tito_Scwrl_3LA7.pdb
: