Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSRKQSIQKTQLSKTKKQTLNVTIDRPIG--YTDKFGNV---YPLNYGFVEGVIGGDGEEQDVYVLSRKISEPIDTFQGDLIAVITRNDDV-EDKWVVAAPNENFTIEEIREK-------------VHFIEQYFDSEIKLI
1JFD Chain:A ((32-145))
------------------------IDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLE----
General information:
TITO was launched using:
RESULT:
Template:
1JFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7937 for 529 contacts (-15.0/contact) +
2D Compatibility (PS) -9915 + (NN) -3541 + (LL) 2740
1D Compatibility (HY) -3600 + (ID) 1550
Total energy: -23803.0 ( -45.00 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1JFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFD-query.scw
PDB file :
Tito_Scwrl_1JFD.pdb
: