Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLVCNAGMSTSFLVEKMKAAGTEQGVEANIWAVSDAELHENWEKADVILLGPQVGYLKGNTEKVVGG-KIPVEVINMLDYGRV--NGAAVLERAIELIG
3NBM Chain:A ((6-108))
ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71116 for 767 contacts (-92.7/contact) +
2D Compatibility (PS) -10989 + (NN) -3466 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -89071.0 ( -116.13 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: