Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGYLMSLAMVLAGILIICAYRNDF-LIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISFLMGLFIFTDYTRHQDTGEER
3RKO Chain:J ((8-46))
---------------------------------------------CGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47020 for 205 contacts (-229.4/contact) +
2D Compatibility (PS) -4072 + (NN) -4241 + (LL) 5640
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -53643.0 ( -261.67 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_3RKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKO-query.scw
PDB file :
Tito_Scwrl_3RKO.pdb
: