Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIPYRLNNKGGLIVTLPGKDETKHRMLTA-HVDTLGAMVKEIKADGRLLLTLIGGYRFNAIEGEYCTIETSAG---DLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRALGIEVGDFVSFDPR-VQIINDEYIKSRHLDDKASVAILLQLINHIHENNL--ELPHTTHFLISN-NEEIGYGG--NSNIPAETVEYLAVDMGALGD-----GQTSDEYTVSICAKDGSGPYHL---GLRKHLVELAKKNNIDYKVDIYPFYASDASAAINAGNDIIHGLIGPGIDASHAYERTHRDSLYHTEKLVYAYLFSNILK |
| 3KL9 Chain:A ((6-340)) | ----------FSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVISG---------------------PAIADIVFDGGFADKAEAESFGIRPGDTIVPDSSAILTANEKNIISKAWDNRYGVLMVSELAEALSGQKLGNEL-----YLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPAGDVYGGQGKIGDGTLIRFYD-----PGHLLLPGMKDFLLTTAEEAGIKYQ-----YYCGKGGTDAGAAHLKNGGVPSTTIGVCARYIHSHQ-TLYAMDDFLEAQAFLQAL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KL9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114813 for 2570 contacts (-44.7/contact) +
2D Compatibility (PS) -31703 + (NN) -8351 + (LL) 1952
1D Compatibility (HY) -13200 + (ID) 4050
Total energy: -170165.0 ( -66.21 by residue)
QMean score : 0.348
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