Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYC---KASCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSF---GVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLGEEFYYSKLYDKDFKHEYR
1VA0 Chain:A ((1-220))
-GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYD-RLVDERVLALAPGEKVYVGKEE----KQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGLPLTHRGLAHGFAAVSGVL----EGGGYP-----DLRPFARVPT-LVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEGKVE--VRPPALWILGE---------------------
General information:
TITO was launched using:
RESULT:
Template:
1VA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121185 for 1730 contacts (-70.0/contact) +
2D Compatibility (PS) -22960 + (NN) -2972 + (LL) 2476
1D Compatibility (HY) -18000 + (ID) 3550
Total energy: -166191.0 ( -96.06 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1VA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VA0-query.scw
PDB file :
Tito_Scwrl_1VA0.pdb
: