Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LETWITSIMADFGYIGIFVLIMVENLFPPIPSEIILTFGGFMTTVTSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKYG-RILRLKESDIERAENFFLKYGSWA--VFLCRMIPLIRSLISIPAGMTKMKMSKFLILTTAGSLLWNTVLIGLGAMLGESWSEIVVFMDSFSTIIYSIIAILVVVGLGFFFRARFKKTLDEE
2VKJ Chain:A ((1-106))
----------------------------------------------GSHMNLAVKLTRMEKTLKAYELYIFSDY---ENFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKLAGD-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61559 for 652 contacts (-94.4/contact) +
2D Compatibility (PS) -10623 + (NN) -1292 + (LL) 9188
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -68136.0 ( -104.50 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_2VKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VKJ-query.scw
PDB file :
Tito_Scwrl_2VKJ.pdb
: