Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VNLEKELKEYLGFDEFRPGQKEVIETALAKQNCFAMLPTGTGKTICYQLAG------HLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQILASI-HSYKFIFLSPEMLNNETVKNLLLKQKISLFVIDEAHCISQWGHDFRPDYLMLGRFIQEAKFPVTMVLTATATKKVRADILTQLHLTDCAQIVYSVNRPNISLQ-VEKF----SNQHVKKDRLYELVRKLQ-TPGIIYFSSKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGEDSVAILLYANGDEFIQMQLADQDIPDANLMNLTTEQRKTLPETEQRFIDYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRYFEEAPLEVTPENCCDLDGAEIINFEKRAKIKQKEIPTWEAYLAYLLQ |
| 2J0S Chain:A ((56-384)) | -----------GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG--FKEQIYDVYRYLP----PATQVVLISATLPHEILEMTNKFMTDPIRIL--VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE-ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD----------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J0S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195913 for 2627 contacts (-74.6/contact) +
2D Compatibility (PS) -34593 + (NN) -11895 + (LL) 12216
1D Compatibility (HY) -15600 + (ID) 3950
Total energy: -249735.0 ( -95.06 by residue)
QMean score : 0.469
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