Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN
3SOK Chain:A ((1-53))
----------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAA-EGLTLADGLKVRISDHLESGECKGDANPASGSLGNDDKGKYALATIDGDYNKDAKTADEKNGCKVVITYGQGTAGEKISKLIVGKKLVLDQF
General information:
TITO was launched using:
RESULT:
Template:
3SOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4995 for 212 contacts (-23.6/contact) +
2D Compatibility (PS) -5494 + (NN) -2000 + (LL) 1596
1D Compatibility (HY) -4000 + (ID) 300
Total energy: -15193.0 ( -71.67 by residue)
QMean score : 0.067
(partial model without unconserved sides chains):
PDB file :
Tito_3SOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SOK-query.scw
PDB file :
Tito_Scwrl_3SOK.pdb
: