Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MVIIVRKKIRAYILLESLVGLAILVTITSLVISE-INRQQSHIARRQHEQE---------------VLILARMAVQTD-QKILEANGVNIRIEES----KNKIVLFEGNKEILHVSKVKG-------------
3BQX Chain:A ((3-141))
LQQVAVITLGIGDLEASARFYGEGFGWAPVFRNPEIIFYQMNGFVLATWLVQNLQEDVGVAVTSRPGSMALAHNVRAETEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSVTFAA
General information:
TITO was launched using:
RESULT:
Template:
3BQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24035 for 628 contacts (-38.3/contact) +
2D Compatibility (PS) -10485 + (NN) 4565 + (LL) 0
1D Compatibility (HY) 2800 + (ID) 350
Total energy: -27505.0 ( -43.80 by residue)
QMean score : 0.017
(partial model without unconserved sides chains):
PDB file :
Tito_3BQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BQX-query.scw
PDB file :
Tito_Scwrl_3BQX.pdb
: