Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQAQYAGTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRLVINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR
4DR5 Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38120 for 930 contacts (-41.0/contact) +
2D Compatibility (PS) -13495 + (NN) -2763 + (LL) 616
1D Compatibility (HY) -7200 + (ID) 3250
Total energy: -64212.0 ( -69.05 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4DR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR5-query.scw
PDB file :
Tito_Scwrl_4DR5.pdb
: