Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFIYGPIFREFRLN------RQFSLKQVASNE-LSVSQLSRFERGES-DLSLTKFLGALEAIDLSISEFMYRVNKYQKSDQISLMSQMAQYHYQRDVAGLEKMISVEEGKLKKDSSDIRCRLNIVLFRGMICECDSSRKMSEEDLCFLSDYLFQKDSWEISDYILIGNLYRYYNTRYICQLVKEVINQKEYYRDIYTNRNVVEATLLNVVETLIERRALEEATFFVEKVEALLNNERNAYHRIILLYEKGFLAYAKGDSRGIQSMKQAIFCFQAIGSKHHVENFQEHFNRVTRL |
| 3PXP Chain:A ((5-77)) | -AAFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGERREFFFAATGIIEQKSATYKRSPEESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFNIPMELIETAPLLPHGYNLMRVVFGTEYDFRRVVGTMWDEVARHNMQLFRAISLRVRADGYFVELLDNLMQYREFKRFWERAHLETEDTSAENFWYQYTHPVYGLLSYVSSRSQIPTSMGLLSMHTYIPLSPATTDLFAKLSTVANQDVIRLAPWPRSNG----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PXP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21938 for 414 contacts (-53.0/contact) +
2D Compatibility (PS) -6857 + (NN) 42 + (LL) 520
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -31333.0 ( -75.68 by residue)
QMean score : 0.439
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