Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFLSIMAGVIAFVLTVIAIPRFIKFYQLKKIGGQQMHEDVKQHLAKAGTPTMGGTVFLIVALLVSLIFSIILSKENSGNLGATFGILSV--VLIYGIIGFLDDF---LKIFKQINEGLTPKQ---KMSLQLIAGLIFYFVHVL-PSGTSAINIFGFYLEVGYLYAFFVLFWVVGFSNAVNLTDGIDGLASISVVISLITYGIIAYNQTQFDILLIIVIMIGALLGFFVFNHKPAKVFMGDVGSLALGAMLAAISIALRQEWTLLFIGFVYVFETSSVMLQVAYFKYTKKKTGVGKRIFRMTPFHHHLELGGVSGKGNKWSEWKVDAFLWAIGIFMSAITLAILYL------ |
| 4BVA Chain:A ((24-334)) | -------KRAPAFLSAEEVQDHLR-------SSSLLIPPLEAALANFSKGPDGG--------VMQPVRTVVPVAKHRGFLGVMPAYSAAEDALTTKLVTFYESHQASVLLFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKFASTVQGDVRVCSSVQEAVTGADVIITVTMA-------------TEPILFGEW--VKPGAHINAVG-ASRPDWREL---------DDELMRQAVLYVDSREAALKESGDVLLSGADIFAELGEVI-SGAKPAHCEKTTVFKSLGMAVEDLVAAKLVYDSWSSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -347601 for 2544 contacts (-136.6/contact) +
2D Compatibility (PS) -30155 + (NN) -2076 + (LL) 4976
1D Compatibility (HY) -3600 + (ID) 2250
Total energy: -380706.0 ( -149.65 by residue)
QMean score : ?
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