Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---MIMEKYTSIKQSGRHYG---LDLLRIISMFMIVITHVLGKGGL-------RSSVEGHADSYFIVTWIIQVLVYGAVNCYALISGYVGINSRYRYSKLLSIWAQVFFYTFTITALFAITGHEVTLLNWRDAFFPIVSGQYWYITAYFGLLVFM--PVINNGLN------ALTDKQLKQLVLLMFIIFSILPAVLNNRVPEFSLSKGFEMTWLLILYIIGAYLKRIDLNIFKTSYLLIIYLLSLVATYAMKFSVGDIWYWYV-------SPTLTLGAVSLFILFARASIKPSGFLKKIIVVLAPSTLGVYLCHLH--PLIVKYFVRDFAETFVYESIYLY--------PFLILGAGILIYLLAFIVERIRL-------------RIFKAIHFSNFLRWFDDKFPY |
4WGV Chain:A ((5-399)) | VGYMDPGNWITSMQGGAQYGYTLLFVILISSLAAMLLQSMTVRLGIATGKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIAEVIGSAIALDLIFG----IPLIVGALITVFDVFLLLFIMRFGFR------KIEAIVGTLIFTVLAIFVFEVFISSPQLTDILNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKYDRHDNEEKAQAIKYATIDSNLQL-SIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLLVFSQVFLSIALPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -342366 for 2745 contacts (-124.7/contact) +
2D Compatibility (PS) -34581 + (NN) -3084 + (LL) 888
1D Compatibility (HY) -20800 + (ID) 3050
Total energy: -402993.0 ( -146.81 by residue)
QMean score : 0.143
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