Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKLFAIHLFFIVISFGIKYYHLQGPNLIWNMTLALIALDFAYLTSLFKKKILIGLFALAWFFFYPNTFYMLTDIIHMHFVGDVLYNKTNLILYILYVSSILFGFLSGIESFSVIMRKFRISNIFLRWGIIGIVSFVSSFGIHIGRYARLNSWDILTKPQVVINELLAVPSRDSFHFILGFTFLQVLCLIFMDYSAGKKLEK
1QQH Chain:A ((66-209))
KSKAHKAIELQMALQGLAQSAYKTED----WTLQDTCEELWNTEPTHCFKKG---------------------GQTVQVYFDGNKDNCMTYVAWDSVYYMT---------DAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCNDSMCSTSDDTVS-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QQH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115693 for 1016 contacts (-113.9/contact) +
2D Compatibility (PS) -14992 + (NN) 2143 + (LL) 5476
1D Compatibility (HY) 2000 + (ID) 1150
Total energy: -122216.0 ( -120.29 by residue)
QMean score : 0.032
(partial model without unconserved sides chains):
PDB file :
Tito_1QQH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QQH-query.scw
PDB file :
Tito_Scwrl_1QQH.pdb
: