Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MKKLFNKRRSLFLTQNSKYLRYV-FNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEPADKQ---FLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIK--LGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQNLNWDAAINHEQERKQSILKFFSLFTNVKGIS-TSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLNILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQL----KGFLRVLSYAVTVIDSILIRELKPVIL-----LIVLMLIVTEYYIPYKIKVSGKSF--------------------------- |
| 4XFK Chain:A ((9-399)) | AEPLKIALVETLSGPQASTGLLYRAAVLYQLGKINEAGGFNGEKIQILEYDNQGGPVGAADRVKAAIADGAQIIVQGSSSAVAGQITEDVRKYNLRNKGKEVLYLNLGAEALELTGSKCHFYHFRFSPNAAIRFKTVAQGMKDKGILGERAYSINQN-------YSWGVDVENTVVANAKEIGYEVVDKTLHEVNK-IQDFSPYVAKIQAANVDTVFTGNWSNDLLLLMKAASGAGLKAKFATSFLDQPGNIGNAGAIAEGHIVSTPFNPEANGEASMAFAEDYKKVT-----GHYPSYVEPAAVFGLQLFGEALKNVKPGEGKINTTDIALAIENASVKTPMGDYSMRSDDHQAKFPMVVQEVSKKARIKADGTEYGFLPFKTFTGDESIDPVQESCSMKRPG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XFK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -304760 for 2878 contacts (-105.9/contact) +
2D Compatibility (PS) -34615 + (NN) 298 + (LL) 1340
1D Compatibility (HY) 6000 + (ID) 2650
Total energy: -334387.0 ( -116.19 by residue)
QMean score : 0.165
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