Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKNKFLLVSIVFIIIFVVQPQNFQSLKNIFTQNDIASQLNISSSPEEKNDGLGTAYQTQNEDLKSKSFDGQHQVIVVNEKAQFTAEELSMRNGSWEKYDNLDFLNRVGVAEAMLGKELMPKEARQDISSVKPTGWKNKKITFNGKQDYLYNRSHLIGFQLSG-------ENANVKNLFTGTRALNANFNDDKSSMVYYENEVANYIKKTNHHVRYRVTPLFKN-VELVARGVRIEAQSIEDETISFDVYIFNGQPGYDIDYLTGSSEKIMITK |
4QGO Chain:B ((57-220)) | -----------------------------------------------------------------------------------------------------IDNQQRPSTANAMLDRTIRQYQNRR---NWKPLGWH--QVATNDHYGHAVDKGALIAYALAGNFKGWDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQ-NKRVRYRVTPLYRNDTDLVPFAMHLEAKS-QDGTLEFNVAIPNTQASYTMDYATGEITLN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QGO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40457 for 1130 contacts (-35.8/contact) +
2D Compatibility (PS) -15873 + (NN) -2340 + (LL) 7344
1D Compatibility (HY) -6400 + (ID) 2600
Total energy: -60326.0 ( -53.39 by residue)
QMean score : 0.374
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