Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYFPSISEETFDFEADWLVKAMDD-NQKRILFVGQGKNGDLELELNYQDNPEPFDNLSVGELVQLPKELFVVPETISYQPQYECF
3LYR Chain:A ((116-147))
--------------EQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKC
General information:
TITO was launched using:
RESULT:
Template:
3LYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2572 for 107 contacts (24.0/contact) +
2D Compatibility (PS) -3181 + (NN) 583 + (LL) 1064
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -2262.0 ( -21.14 by residue)
QMean score : -0.114
(partial model without unconserved sides chains):
PDB file :
Tito_3LYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LYR-query.scw
PDB file :
Tito_Scwrl_3LYR.pdb
: