Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEFIANGRVASIPDDAVGRTANGHVSFKFEFVCDSSQQDQEGKG---LPAFFHVQVYGKQAEIMAQSLSKGLPILIKGEIIQRPYTNQQGQRRTFQYISPSQHDGITFLESKEATKKRKQGRFTSQAVTSPTLAYSEPVDADEPF
3AFP Chain:A ((4-116))
DTTITIVGNLTADP--ELRFTSSGAAVVNFTVASTP-------EWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFE-REGEKRTVVEVEVDEI---GPSLRYATAKVNKA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51430 for 638 contacts (-80.6/contact) +
2D Compatibility (PS) -11176 + (NN) -4401 + (LL) 1344
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -69413.0 ( -108.80 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3AFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFP-query.scw
PDB file :
Tito_Scwrl_3AFP.pdb
: