Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLIAIDMDGTLLNDE-KKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGLTK--EEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVCLTLTAENTFYAVGEEVPEIVAYDADLVFTKAKSTSLDALRNQEEIVFQAMYMGLDADVTAF--QEAVEEALISKFSGVRSQDY--IYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR
2RBK Chain:A ((1-260))
MTKALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRP-KAIINNLSELQDRNLIDGYITMNGA---YCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDF-LHVNVIPTVSFEEASNKEVI-----------QMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII
General information:
TITO was launched using:
RESULT:
Template:
2RBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114649 for 2254 contacts (-50.9/contact) +
2D Compatibility (PS) -27647 + (NN) -10198 + (LL) 1380
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -169064.0 ( -75.01 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_2RBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RBK-query.scw
PDB file :
Tito_Scwrl_2RBK.pdb
: