Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFAKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPT---NLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLM-GNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNP----YLKQVGKSYQVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
4QO2 Chain:A ((9-179))
--------PVTWVMMIACVVVFIAMQIL-GDQEVMLWLAWPFD----------PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF--GGLSGVVYALMGYVWLRGE--RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLN-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QO2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135073 for 1290 contacts (-104.7/contact) +
2D Compatibility (PS) -16435 + (NN) -3024 + (LL) 5216
1D Compatibility (HY) -18800 + (ID) 2000
Total energy: -170116.0 ( -131.87 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_4QO2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QO2-query.scw
PDB file :
Tito_Scwrl_4QO2.pdb
: