Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFPNIDNIIKNYIKEMITHSDIPDLQKQLETAYQVPYSFALGIYISTIESIILNWIDHDFTEEPEEIARYITSVVRI
3KKC Chain:A ((134-175))
----------------------------------DIPEDFLKQFLLSSFIETLKWWLHQRQKMTVEDLLKYYLTMVER
General information:
TITO was launched using:
RESULT:
Template:
3KKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15540 for 189 contacts (-82.2/contact) +
2D Compatibility (PS) -4246 + (NN) 407 + (LL) 2596
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -20733.0 ( -109.70 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3KKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKC-query.scw
PDB file :
Tito_Scwrl_3KKC.pdb
: