Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKELRSKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKG------VEVVHAFVNKVMIPHVEKGTYERV-KDYKTSLQELLQSHGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATLQ
1YYO Chain:A ((6-218))
------QLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEG---RVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI-KEYRTLGEGKSKKEAEQRAAEELIKLLE
General information:
TITO was launched using:
RESULT:
Template:
1YYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82349 for 1488 contacts (-55.3/contact) +
2D Compatibility (PS) -22295 + (NN) -10548 + (LL) 1312
1D Compatibility (HY) -18800 + (ID) 3750
Total energy: -136430.0 ( -91.69 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1YYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YYO-query.scw
PDB file :
Tito_Scwrl_1YYO.pdb
: