Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNHKTKKLTVLAIMIALDVFLTPIFRIEGMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK |
1SMZ Chain:A ((8-13)) | ------------------------------------------GYLLGKINLKALAALAKKIL------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SMZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 92 for 14 contacts (6.6/contact) +
2D Compatibility (PS) -660 + (NN) -123 + (LL) 15968
1D Compatibility (HY) -1200 + (ID) 100
Total energy: 13977.0 ( 998.36 by residue)
QMean score : -0.598
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