Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEEDDV---RSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLLGVNSAMYAENDCGIAHLAS--ETL------GVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNYSTRQKVMFLPKSKLNLIQSYLTKK
1IMA Chain:A ((9-251))
----MDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLL-VTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRVIAANNRILAERIAKEIQVI
General information:
TITO was launched using:
RESULT:
Template:
1IMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138903 for 1891 contacts (-73.5/contact) +
2D Compatibility (PS) -25033 + (NN) -11757 + (LL) 168
1D Compatibility (HY) -13600 + (ID) 3350
Total energy: -192475.0 ( -101.78 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1IMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IMA-query.scw
PDB file :
Tito_Scwrl_1IMA.pdb
: