Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFNLEQVKVFENYEI--------ENWEEGQVTLTTKVVDSSLNYYGNAHGGYLFTLCDQVSGLVAI----STGYEAVTLQSNINYLRAGRLDDLLTVIGTCVHNGRTTKVVDVHIKNQKGEMVTTAIFTMFVTGERKEK
4QD8 Chain:A ((9-137))
---DLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLR-SGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL----
General information:
TITO was launched using:
RESULT:
Template:
4QD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68220 for 826 contacts (-82.6/contact) +
2D Compatibility (PS) -12554 + (NN) -2264 + (LL) 664
1D Compatibility (HY) -2400 + (ID) 1650
Total energy: -86424.0 ( -104.63 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4QD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD8-query.scw
PDB file :
Tito_Scwrl_4QD8.pdb
: